Assays

What is an Assay?

15 Assays visible to you, out of a total of 34

Western blot

Forschungsnetzwerk LiSyM-Krebs, SMART-NAFLD, DEEP-HCC network, C-TIP-HCC network

Western blot

Submitter: Olga Krebs

Assay type: Immune Precipitation

Technology type: Technology Type

Investigation: LiSyM-Cancer project data for integration into...

Study: Several proteomics experimental data

Organisms: No organisms

SOPs: SOP template based on nature protocol format an...

Data files: No Data files

Snapshots: No snapshots

Created: 20th Dec 2023 at 11:54, Last updated: 2nd Sep 2024 at 13:16

Experimental assay NAFLD/eNASH

LiSyM Pillar I: Early Metabolic Injury (LiSyM-EMI)

Experimental assay Human-NAFLD/eNASH Samples for the eNASH category were obtained in patients undergoing bariatric surgery with a BMI > 30 and subgroups defined by liver histology as follows: eNASH samples were characterized by >5% fat, an inflammation grade of at least 1, fibrosis ≤1 and ballooning ≤1.

Image data for this assay available via link to file folder containing image data for listed patient IDs (patientID in a file name) ...

Submitter: Olga Krebs

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Three-dimensional spatially resolved geometrica...

Study: Generation of 3D spatially resolved geometrical...

Organisms: No organisms

SOPs: No SOPs

Data files: Patient characteristics by group

Snapshots: No snapshots

Created: 16th Mar 2022 at 12:49, Last updated: 12th Jun 2024 at 14:47

RNA sequence data

Forschungsnetzwerk LiSyM-Krebs, SMART-NAFLD, DEEP-HCC network, C-TIP-HCC network

RNA sequence data

Submitter: Olga Krebs

Assay type: RNA-seq Profiling

Technology type: Technology Type

Investigation: LiSyM-Cancer project data for integration into...

Study: GENOMICS/TRANSCRIPTOMICS

Organisms: No organisms

SOPs: SOP for RNAseq sample preparation and 1 hidden item

Data files: 1 hidden item

Snapshots: No snapshots

Created: 19th Dec 2023 at 10:36, Last updated: 27th Dec 2023 at 10:28

DNA sequence data

Forschungsnetzwerk LiSyM-Krebs, SMART-NAFLD, DEEP-HCC network, C-TIP-HCC network

DNA sequence data

Submitter: Olga Krebs

Assay type: Transcriptomics

Technology type: Technology Type

Investigation: LiSyM-Cancer project data for integration into...

Study: GENOMICS/TRANSCRIPTOMICS

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 27th Dec 2023 at 10:15

Modelling asssay II Lucarelli paper

LiSyM network

No description specified

Submitter: Olga Krebs

Biological problem addressed: Signal Induction

Investigation: Investigation of the Smad Protein Complex Forma...

Study: Study about Smad complexes in liver-derived cells

Organisms: No organisms

Models: 1 hidden item

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 28th Mar 2023 at 13:52

exp assay I Lucarelli paper

LiSyM network

exp assay I Lucarelli paper

Submitter: Olga Krebs

Assay type: Proteomics

Technology type: Mass Spectrometry

Investigation: Investigation of the Smad Protein Complex Forma...

Study: Study about Smad complexes in liver-derived cells

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 28th Mar 2023 at 13:51

Contains all DMPlaning documents 2022

Forschungsnetzwerk LiSyM-Krebs, SMART-NAFLD, DEEP-HCC network, C-TIP-HCC network

DMPlaning 2022

Submitter: Olga Krebs

Biological problem addressed: Model Analysis Type

Investigation: 1 hidden item

Study: 1 hidden item

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 31st Jan 2022 at 16:17, Last updated: 25th Oct 2022 at 08:13

DNA-methylation at binding sites of uniformly expressed transcription factors in human hepatocytes ; hepatic zone: intermediate (IZ)

LiSyM Pillar I: Early Metabolic Injury (LiSyM-EMI)

(Show All)

DNA-methylation at binding sites of uniformly expressed transcription factors in human hepatocytes ; hepatic zone: intermediate (IZ)

Submitter: Olga Krebs

Assay type: Methylation Profiling

Technology type: Technology Type

Investigation: Epigenomic analysis of micro-dissected human liver

Study: Integrated epigenetic map across three hepatic...

Organisms: Homo sapiens

SOPs: No SOPs

Snapshots: No snapshots

Created: 25th Jan 2022 at 17:56, Last updated: 3rd Feb 2022 at 13:04

DMPlaning 2021

Forschungsnetzwerk LiSyM-Krebs, SMART-NAFLD, DEEP-HCC network, C-TIP-HCC network

DMPlaning 2021

Submitter: Olga Krebs

Biological problem addressed: Model Analysis Type

Investigation: 1 hidden item

Study: 1 hidden item

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 31st Jan 2022 at 16:16

DNA-methylation at binding sites of uniformly expressed transcription factors in human hepatocytes ; hepatic zone: periportal (PP)

LiSyM Pillar I: Early Metabolic Injury (LiSyM-EMI)

(Show All)

DNA-methylation at binding sites of uniformly expressed transcription factors in human hepatocytes ; periportal (PP)

Submitter: Olga Krebs

Assay type: Methylation Profiling

Technology type: Technology Type

Investigation: Epigenomic analysis of micro-dissected human liver

Study: Integrated epigenetic map across three hepatic...

Organisms: Homo sapiens

SOPs: No SOPs

Snapshots: No snapshots

Created: 25th Jan 2022 at 18:21, Last updated: 28th Jan 2022 at 11:50

Project deliverables 2022

Forschungsnetzwerk LiSyM-Krebs, SMART-NAFLD, DEEP-HCC network, C-TIP-HCC network

Project deliverables 2022

Submitter: Olga Krebs

Biological problem addressed: Model Analysis Type

Investigation: 1 hidden item

Study: Documents submitted to BMBF

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 8th Feb 2021 at 09:26

Project deliverables 2021

Forschungsnetzwerk LiSyM-Krebs, SMART-NAFLD, DEEP-HCC network, C-TIP-HCC network

Project deliverables 2021

Submitter: Olga Krebs

Biological problem addressed: Model Analysis Type

Investigation: 1 hidden item

Study: Documents submitted to BMBF

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 8th Feb 2021 at 09:26

Meeting minutes 2022

Forschungsnetzwerk LiSyM-Krebs, SMART-NAFLD, DEEP-HCC network, C-TIP-HCC network

Meeting minutes 2022

Submitter: Olga Krebs

Biological problem addressed: Model Analysis Type

Investigation: 1 hidden item

Study: Meeting minutes

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 8th Feb 2021 at 09:25

Meeting minutes 2021

Forschungsnetzwerk LiSyM-Krebs, SMART-NAFLD, DEEP-HCC network, C-TIP-HCC network

Meeting minutes 2021

Submitter: Olga Krebs

Biological problem addressed: Model Analysis Type

Investigation: 1 hidden item

Study: Meeting minutes

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 8th Feb 2021 at 09:25

Project proposals

Forschungsnetzwerk LiSyM-Krebs, SMART-NAFLD, DEEP-HCC network, C-TIP-HCC network

Project proposals

Submitter: Olga Krebs

Biological problem addressed: Model Analysis Type

Investigation: 1 hidden item

Study: Documents submitted to BMBF

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 8th Feb 2021 at 09:20, Last updated: 8th Feb 2021 at 09:21

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