Transcriptomics: the RNA expression of primary hepatocytes and BMDM (Bone Marrow–Derived acrophages) were analysed in 4 different conditions (mono- vs. co-culture, hepatocytes and macrophages) with 5 replicas each to detect the impact of hepatocytes on macrophages and vice versa.
SEEK ID: https://seek.lisym.org/assays/278
Experimental assay
Projects: C-TIP-HCC network, Forschungsnetzwerk LiSyM-Krebs
Investigation: Hepatocytes reprogram liver macrophages involving control of TGF-β activation, influencing liver regeneration and injury.
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Assay type: Experimental Assay Type
Technology type: Technology Type
Organisms: No organisms
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Created: 2nd Aug 2023 at 09:19
Last updated: 6th May 2024 at 07:40
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Projects: LiSyM Pillar III: Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF), LiSyM Pillar II: Chronic Liver Disease Progression (LiSyM-DP), Forschungsnetzwerk LiSyM-Krebs, C-TIP-HCC network
Institutions: Universitätsklinikum Düsseldorf - Klinik für Gastroenterologie, Hepatologie und Infektiologie
https://orcid.org/0000-0003-2693-1260LiSyM-Krebs ist ein nationales Forschungsnetz zur Früherkennung und Prävention von Leberkrebs, das unter Verwendung des systemmedizinischen Forschungsansatzes die komplexen, dynamischen Prozesse der Krankheitsprogression analysiert, um ausgehend von den Erkenntnissen aus dem Forschungsnetz LiSyM die Entstehung von Leberkrebs besser zu verstehen, vorherzusagen und im besten Fall sogar zu verhindern. LiSyM-Krebs setzt die erfolgreichen Forschungsaktivitäten der BMBF-Vorgängerprogramme ...
Projects: LiSyM-Krebs Partnering, Forschungsnetzwerk LiSyM-Krebs, SMART-NAFLD, DEEP-HCC network, C-TIP-HCC network
Web page: https://www.lisym-cancer.org
C-TIP-HCC- Mechanism-based Multiscale Model to Dissect the Tipping Point from Liver Cirrhosis to Hepatocellular Carcinoma
The ultimate goal of the C-TIP-HCC is a „mechanistic multiscale model to describe dynamic changes in regenerative nodes across a tipping point (TIP) towards development in patients with cirrhosis to facilitate early monitoring and intervention“ and facilitate intervention“. To achieve this, we will conduct in-depth studies on cirrhotic regenerative nodes.
Programme: LiSyM-Krebs - Systemmedizinisches Forschungsnetz zur Früherkennung und Prävention von Leberkrebs
Public web page: Not specified
Organisms: Homo sapiens, Mus musculus
Forschungsnetzwerk zur Früherkennung und Prävention- LiSyM-Krebs
Ein Netzwerk von Klinikern, Wissenschaftlern und Datenmanagern hat sich zur Aufgabe gemacht, Methoden zu entwickeln, um Patienten mit einem hohen Risiko für ein Leberkarzinom frühzeitig, in Vorstadien der Tumorentwicklung, identifizieren zu können. Gemeinsam bilden sie das „Systemmedizinische Forschungsnetzwerk zur Früherkennung und Prävention von Leberkrebs“, LiSym-Krebs, das vom Bundesministerium für Bildung und Forschung ...
Programme: LiSyM-Krebs - Systemmedizinisches Forschungsnetz zur Früherkennung und Prävention von Leberkrebs
Public web page: Not specified
Organisms: Homo sapiens, Mus musculus, Rattus norvegicus, Rattus rattus
Macrophages play an important role in maintaining liver homeostasis and regeneration. Here we investigate how different macrophage populations of the liver differ in terms of their activation state and which other liver cell populations may play a role in regulating the same.
Submitter: Stephanie Wolf
Studies: Study changes in gene expressionand in the activation state of macrophag...
Assays: Hepatocytes induces properties of wound healing type and regulatory macr..., Transcriptomics : RNA Microarray, Transcriptomics: RNA-seq of coding RNA from single cells
Snapshots: No snapshots
Reverse transcription PCR, flow cytometry, transcriptome, proteome, secretome, single cell analysis, and immunohistochemical methods were used to study changes in gene expression as well as the activation state of macrophages in vitro and in vivo under homeostatic conditions and after partial hepatectomy.
Submitter: Stephanie Wolf
Investigation: Hepatocytes reprogram liver macrophages involvi...
Assays: Hepatocytes induces properties of wound healing type and regulatory macr..., Transcriptomics : RNA Microarray, Transcriptomics: RNA-seq of coding RNA from single cells
Snapshots: No snapshots
Data deposited on the European Bioinformatics Insititute (EBI) database under accession number E-MTAB- 11727 (https://www.ebi.ac.uk/arrayexpress/experiments/ E-MTAB-11727)
Hepatocyte-controlled availability of activated TGFb reprograms macrophage polarization affecting liver injury and regeneration.
Samples in SEEK (ArrayExpress-compliant sample type https://seek.lisym.org/sample_types/21)
GEO data set
Investigations: Hepatocytes reprogram liver macrophages involvi...
Studies: Study changes in gene expressionand in the acti...
Assays: Transcriptomics : RNA Microarray
SOP: Mice hepatocytes isolation and co-cultivation with BMDM
Creator: Stephanie Wolf
Submitter: Stephanie Wolf