Assay type 'Transcriptomics'

Experimental Assay Type
Current Assay type

Current Assay type

Transcriptomics
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Cell Count (0) | Comparative Genomic Hybridization (0) | Gene Expression Profiling (0) | Methylation Profiling (3) | MicroRNA Profiling (0) | RNA-seq Profiling (4) | RNAi (0) | Tiling Path (0) | Transcriptional Analysis (0)

Related assays

9 Assays visible to you, out of a total of 12

Transcriptomic analysis of hepatocytes ; hepatic zone: pericentral (CV)

LiSyM Pillar I: Early Metabolic Injury (LiSyM-EMI)

Transcriptomic analysis of hepatocytes captured by laser micro-dissection from hepatic zone: pericentral (CV)

Submitter: Mario Brosch

Assay type: RNA-seq Profiling

Technology type: Rna-seq

Investigation: Epigenomic analysis of micro-dissected human liver

Study: Integrated epigenetic map across three hepatic...

Organisms: Homo sapiens

SOPs: SOP : liver tissue microdissection for RNA seq...

Data files: Human RNA-Seq data set GSM2819677 stored in..., Human RNA-Seq data set GSM2819678 stored in..., Human RNA-Seq data set GSM2819679 stored in..., Human RNA-Seq data set GSM2819680 stored in..., Human RNA-Seq data set GSM2819681 stored in..., Human RNA-Seq data set GSM2819682 stored in..., Human RNA-Seq data set GSM2819683 stored in..., Human RNA-Seq data set GSM2819684 stored in..., Human RNA-Seq data set GSM2819685 stored in..., Human RNA-Seq data set GSM2819686 stored in..., Human RNA-Seq data set GSM2819687 stored in..., Human RNA-Seq data set GSM2819688 stored in..., Human RNA-Seq data set GSM2819689 stored in..., Human RNA-Seq data set GSM2819690 stored in..., Human RNA-Seq data set GSM2819691 stored in..., Human RNA-Seq data set GSM2819692 stored in..., Human RNA-Seq data set GSM2819693 stored in..., Human RNA-Seq data set GSM2819694 stored in..., Human RNA-Seq data set GSM2819695 stored in...

Snapshots: No snapshots

Created: 13th Jul 2021 at 08:39, Last updated: 3rd Feb 2022 at 11:47

DNA-methylation at binding sites of uniformly expressed transcription factors in human hepatocytes ; hepatic zone: pericentral (CV)

LiSyM Pillar I: Early Metabolic Injury (LiSyM-EMI)

DNA-methylation at binding sites of uniformly expressed transcription factors in human hepatocytes ; hepatic zone: pericentral (CV)

Submitter: Mario Brosch

Assay type: Methylation Profiling

Technology type: Technology Type

Investigation: Epigenomic analysis of micro-dissected human liver

Study: Integrated epigenetic map across three hepatic...

Organisms: Homo sapiens

SOPs: No SOPs

Data files: Human DNA methylation data set GSM2819627 sto..., Human DNA methylation data set GSM2819634 ..., Human DNA methylation data set GSM2819636 ..., Human DNA methylation data set GSM2819638 ..., Human DNA methylation data set GSM2819621 stor..., Human DNA methylation data set GSM2819622 stor..., Human DNA methylation data set GSM2819623 stor..., Human DNA methylation data set GSM2819629 s..., Human DNA methylation data set GSM2819630 s..., Human DNA methylation data set GSM2819631 s..., Human DNA methylation data set GSM2819632 s..., Human DNA methylation data set GSM2819633 s..., Human DNA methylation data set GSM2819635 s..., Human DNA methylation data set GSM2819637 s..., Human DNA methylation data set GSM2819624 stor..., Human DNA methylation data set GSM2819625 store..., Human DNA methylation data set GSM2819626 store..., Human DNA methylation data set GSM2819628 store..., HumanDNA methylation data set GSM2819620 st...

Snapshots: No snapshots

Created: 19th Jul 2021 at 04:44, Last updated: 2nd Feb 2022 at 07:45

Transcriptomic analysis of hepatocytes ( hepatic zone: intermediate (IZ)

LiSyM Pillar I: Early Metabolic Injury (LiSyM-EMI)

Transcriptomic analysis of hepatocytes captured by laser micro-dissection from hepatic zone: intermediate (IZ)

Submitter: Mario Brosch

Assay type: RNA-seq Profiling

Technology type: Rna-seq

Investigation: Epigenomic analysis of micro-dissected human liver

Study: Integrated epigenetic map across three hepatic...

Organisms: Homo sapiens

SOPs: SOP : liver tissue microdissection for RNA seq...

Data files: Human RNA-Seq data set GSM2819696 stored in..., Human RNA-Seq data set GSM2819697 stored in..., Human RNA-Seq data set GSM2819698 stored in..., Human RNA-Seq data set GSM2819699 stored in..., Human RNA-Seq data set GSM2819700 stored in..., Human RNA-Seq data set GSM2819701 stored in..., Human RNA-Seq data set GSM2819702 stored in..., Human RNA-Seq data set GSM2819703 stored in..., Human RNA-Seq data set GSM2819704 stored in..., Human RNA-Seq data set GSM2819705 stored in..., Human RNA-Seq data set GSM2819706 stored in..., Human RNA-Seq data set GSM2819707 stored in..., Human RNA-Seq data set GSM2819708 stored in..., Human RNA-Seq data set GSM2819709 stored in..., Human RNA-Seq data set GSM2819710 stored in..., Human RNA-Seq data set GSM2819711 stored in..., Human RNA-Seq data set GSM2819712 stored in..., Human RNA-Seq data set GSM2819713 stored in..., Human RNA-Seq data set GSM2819714 stored in ...

Snapshots: No snapshots

Created: 15th Dec 2021 at 12:26, Last updated: 22nd Aug 2022 at 17:26

Transcriptomic analysis of hepatocytes ( hepatic zone: periportal (PP)

LiSyM Pillar I: Early Metabolic Injury (LiSyM-EMI)

Transcriptomic analysis of hepatocytes captured by laser micro-dissection from hepatic zone: periportal (PP)

Submitter: Mario Brosch

Assay type: RNA-seq Profiling

Technology type: Rna-seq

Investigation: Epigenomic analysis of micro-dissected human liver

Study: Integrated epigenetic map across three hepatic...

Organisms: Homo sapiens

SOPs: SOP : liver tissue microdissection for RNA seq...

Data files: Human RNA-Seq data set GSM2819715 stored in..., Human RNA-Seq data set GSM2819716 stored in..., Human RNA-Seq data set GSM2819717 stored in..., Human RNA-Seq data set GSM2819718 stored in..., Human RNA-Seq data set GSM2819719 stored in..., Human RNA-Seq data set GSM2819720 stored in..., Human RNA-Seq data set GSM2819721 stored in..., Human RNA-Seq data set GSM2819722 stored in..., Human RNA-Seq data set GSM2819723 stored in..., Human RNA-Seq data set GSM2819724 stored in..., Human RNA-Seq data set GSM2819725 stored in..., Human RNA-Seq data set GSM2819726 stored in..., Human RNA-Seq data set GSM2819727 stored in..., Human RNA-Seq data set GSM2819728 stored in..., Human RNA-Seq data set GSM2819729 stored in..., Human RNA-Seq data set GSM2819730 stored in..., Human RNA-Seq data set GSM2819731 stored in..., Human RNA-Seq data set GSM2819732 stored in..., Human RNA-Seq data set GSM2819733 stored in...

Snapshots: No snapshots

Created: 15th Dec 2021 at 12:27, Last updated: 23rd Aug 2022 at 09:03

DNA-methylation at binding sites of uniformly expressed transcription factors in human hepatocytes ; hepatic zone: intermediate (IZ)

LiSyM Pillar I: Early Metabolic Injury (LiSyM-EMI)

(Show All)

DNA-methylation at binding sites of uniformly expressed transcription factors in human hepatocytes ; hepatic zone: intermediate (IZ)

Submitter: Olga Krebs

Assay type: Methylation Profiling

Technology type: Technology Type

Investigation: Epigenomic analysis of micro-dissected human liver

Study: Integrated epigenetic map across three hepatic...

Organisms: Homo sapiens

SOPs: No SOPs

Data files: Human DNA methylation data set GSM2819639 ..., Human DNA methylation data set GSM2819641 ..., Human DNA methylation data set GSM2819642 ..., Human DNA methylation data set GSM2819643 ..., Human DNA methylation data set GSM2819647 ..., Human DNA methylation data set GSM2819640 s..., Human DNA methylation data set GSM2819644 s..., Human DNA methylation data set GSM2819645 s..., Human DNA methylation data set GSM2819646 s..., Human DNA methylation data set GSM2819648 s..., Human DNA methylation data set GSM2819650 s..., Human DNA methylation data set GSM2819651 s..., Human DNA methylation data set GSM2819652 s..., Human DNA methylation data set GSM2819653 s..., Human DNA methylation data set GSM2819654 s..., Human DNA methylation data set GSM2819655 s..., Human DNA methylation data set GSM2819656 s..., Human DNA methylation data set GSM2819657 s..., HumanDNA methylation data set GSM2819649 st...

Snapshots: No snapshots

Created: 25th Jan 2022 at 17:56, Last updated: 3rd Feb 2022 at 13:04

DNA-methylation at binding sites of uniformly expressed transcription factors in human hepatocytes ; hepatic zone: periportal (PP)

LiSyM Pillar I: Early Metabolic Injury (LiSyM-EMI)

(Show All)

DNA-methylation at binding sites of uniformly expressed transcription factors in human hepatocytes ; periportal (PP)

Submitter: Olga Krebs

Assay type: Methylation Profiling

Technology type: Technology Type

Investigation: Epigenomic analysis of micro-dissected human liver

Study: Integrated epigenetic map across three hepatic...

Organisms: Homo sapiens

SOPs: No SOPs

Data files: Human DNA methylation data set GSM2819660 ..., Human DNA methylation data set GSM2819663 ..., Human DNA methylation data set GSM2819662 ..., Human DNA methylation data set GSM2819659 ..., Human DNA methylation data set GSM2819661 ..., Human DNA methylation data set GSM2819670 ..., Human DNA methylation data set GSM2819671 ..., Human DNA methylation data set GSM2819672 ..., Human DNA methylation data set GSM2819673 ..., Human DNA methylation data set GSM2819675 ..., Human DNA methylation data set GSM2819676 ..., Human DNA methylation data set GSM2819658 s..., Human DNA methylation data set GSM2819664 s..., Human DNA methylation data set GSM2819665 s..., Human DNA methylation data set GSM2819666 s..., Human DNA methylation data set GSM2819667 s..., Human DNA methylation data set GSM2819668 s..., Human DNA methylation data set GSM2819669 s..., Human DNA methylation data set GSM2819674 s...

Snapshots: No snapshots

Created: 25th Jan 2022 at 18:21, Last updated: 28th Jan 2022 at 11:50

Transcriptomics: RNA-seq of coding RNA from single cells

Forschungsnetzwerk LiSyM-Krebs, C-TIP-HCC network

We describe a distinct macrophage population, whose presence in the liver during homoeostasis depends on recruitment signals mediated by the chemokine receptor CCR2. The identified polarization state of this population closely resembles that induced in co-culture experiments, where hepatocytes are reducing the availability of TGFb to macrophages. Accordingly, disruption of TGFb signal transduction in macrophages phenocopies the influence of hepatocytes on macrophage polarization.

Submitter: Stephanie Wolf

Assay type: Transcriptomics

Technology type: Technology Type

Investigation: Hepatocytes reprogram liver macrophages involvi...

Study: Study changes in gene expression and in the act...

Organisms: No organisms

SOPs: SOP: Mice hepatocytes isolation and co-cultivat...

Data files: Sequence data at ENA, The single-cell RNA sequencing data (ArrayExpress)

Snapshots: No snapshots

Created: 2nd Aug 2023 at 08:57, Last updated: 6th May 2024 at 07:40

RNA sequence data

Forschungsnetzwerk LiSyM-Krebs, SMART-NAFLD, DEEP-HCC network, C-TIP-HCC network

RNA sequence data

Submitter: Olga Krebs

Assay type: RNA-seq Profiling

Technology type: Technology Type

Investigation: LiSyM-Cancer project data for integration into...

Study: GENOMICS/TRANSCRIPTOMICS

Organisms: No organisms

SOPs: SOP for RNAseq sample preparation and 1 hidden item

Data files: 1 hidden item

Snapshots: No snapshots

Created: 19th Dec 2023 at 10:36, Last updated: 27th Dec 2023 at 10:28

DNA sequence data

Forschungsnetzwerk LiSyM-Krebs, SMART-NAFLD, DEEP-HCC network, C-TIP-HCC network

DNA sequence data

Submitter: Olga Krebs

Assay type: Transcriptomics

Technology type: Technology Type

Investigation: LiSyM-Cancer project data for integration into...

Study: GENOMICS/TRANSCRIPTOMICS

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 27th Dec 2023 at 10:15

(v.1.16.0)

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