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Programme
LiSyM: Liver Systems Medicine 2
LiSyM-Krebs - Systemmedizinisches Forschungsnetz zur Früherkennung und Prävention von Leberkrebs2
Project
LiSyM network2
LiSyM-Krebs Partnering2
LiSyM Pillar III: Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF)1
Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM)1
Institution
Heidelberg University Hospital - Hamamatsu Tissue Imaging and Analysis Center (TIGA)1
Leibniz-Institut für Arbeitsforschung (IfADo)1
Location
Germany2
Expertise
image analysis2
Tool
image analysis2
Cell and tissue culture9
Molecular Biology7
qPCR6
Isolation and cultivation of mouse hepatocyte5
Mathematical Modelling4
Immunohistochemistry4
confocal microscopy4
Computational and theoretical biology3
Metabolomics3
Python3
live cell imaging3
RNA analysis3
Biochemistry and protein analysis2
Cell biology2
Cytometry and fluorescent microscopy2
Isolation purification and separation2
SBML2
Partial differential equations2
Copasi2
rtPCR2
Cytoscape2
kinetic modelling2
openBis2
SED-ML2
FBA2
Morpheus2
Bifurcation analysis2
Mouse surgery2
pharmacokinetics2
Dynamic modeling/dMod2
Biobanking2
Cell Isolation2
Microbiology1
Proteomics1
Immunological techniques1
ODE1
Algebraic equations1
Databases1
Java1
Workflows1
Web services1
PCR1
Microarray analysis1
R1
Intravital imaging1
Ontologies1
SEEK1
Protege1
JWS online RightFiled1
Stability analysis1
Multiscale simulation1
Liver resection1
3D reconstruction1
in vivo 2-photon imaging1
Animal facility1
Computer Graphics1
Qt1
PDEs1
Computer Simulations1
Parameter estimation1
Data2Dynamics/d2d1
Parameter identifiability - Profile likelihood1
MorpheusML1
iPSCs1
in vitro differentiation1
microfluidics1
REIMS1
Digital Pathology1
AI1
ImageJ1
Image Processing1
flow cytometry1
FAIRDOM-SEEK1
SABIO-RK1
Mathematical Modeling1
Julia1
Agent-Based Modeling1
Nextcloud1
OMERO1
REDCap1
Groovy1
Ruby1
Docker1
BERT1
Llama1
QuPath1
More...
We are building digital pathology application for biomarker analysis in epidemiological and clinical studies. This includes management and supporting the creation of very large data collections from whole-slide imaging. In large epidemiological studies AI image analysis is validated yielding clinically useful biomarker analysis for translating research projects into applications.