The LiSyM Seek

5 items tagged with 'Simulation'.

Morpheus: open source modelling and simulation framework for multicellular systems

Early Metabolic Injury (LiSyM-EMI - Pillar I), LiSyM PALs

Morpheus is the modelling and simulation framework for multicellular systems biology developed at Technische Universität Dresden.
Manual, examples and binaries for Windows, Linux, MacOS at: https://imc.zih.tu-dresden.de/wiki/morpheus
Open source code at: https://gitlab.com/morpheus.lab/morpheus

Creators: Lutz Brusch, Jörn Starruß, Walter de Back, Andreas Deutsch

Contributor: Lutz Brusch

Model type: Agent based modelling

Model format: MorpheusML

Environment: Morpheus

Organism: Not specified

Investigations: No Investigations

Studies: No Studies

Modelling analyses: No Modelling analyses

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Created: 21st Jul 2017 at 17:13, Last updated: 26th Apr 2018 at 06:46

Wet-tip versus dry-tip regimes of osmotically driven fluid flow

Early Metabolic Injury (LiSyM-EMI - Pillar I)

Abstract (Expand)

The secretion of osmolytes into a lumen and thereby caused osmotic water inflow can drive fluid flows in organs without a mechanical pump. Such fluids include saliva, sweat, pancreatic juice and bile. ...

Authors: Oleksandr Ostrenko, Jochen Hampe, Lutz Brusch

Date Published: 1st Dec 2019

Journal: Sci Rep

DOI: 10.1038/s41598-019-40853-7

Citation: Sci Rep 9(1) : 823

Created: 20th May 2019 at 15:27, Last updated: 20th May 2019 at 15:32

pSSAlib: The partial-propensity stochastic chemical network simulator

Early Metabolic Injury (LiSyM-EMI - Pillar I)

Abstract (Expand)

Chemical reaction networks are ubiquitous in biology, and their dynamics is fundamentally stochastic. Here, we present the software library pSSAlib, which provides a complete and concise implementation ...

Authors: Oleksandr Ostrenko, Pietro Incardona, Rajesh Ramaswamy, Lutz Brusch, Ivo F. Sbalzarini

Date Published: 4th Dec 2017

Journal: PLoS Comput Biol

DOI: 10.1371/journal.pcbi.1005865

Citation: PLoS Comput Biol 13(12) : e1005865

Created: 19th Dec 2017 at 15:19, Last updated: 19th Dec 2017 at 15:21

A Predictive 3D Multi-Scale Model of Biliary Fluid Dynamics in the Liver Lobule

Early Metabolic Injury (LiSyM-EMI - Pillar I)

Abstract (Expand)

Bile, the central metabolic product of the liver, is transported by the bile canaliculi network. The impairment of bile flow in cholestatic liver diseases has urged a demand for insights into its ...

Authors: Kirstin Meyer, Oleksandr Ostrenko, Georgios Bourantas, Hernan Morales-Navarrete, Natalie Porat-Shliom, Fabian Segovia-Miranda, Hidenori Nonaka, Ali Ghaemi, Jean-Marc Verbavatz, Lutz Brusch, Ivo Sbalzarini, Yannis Kalaidzidis, Roberto Weigert, Marino Zerial

Date Published: 1st Mar 2017

Journal: Cell Systems

DOI: 10.1016/j.cels.2017.02.008

Citation: Cell Systems 4(3) : 277

Created: 19th Dec 2017 at 15:12, Last updated: 19th Dec 2017 at 15:17

Integration of Representative Sinusoids into a Physiologically Based Whole-Body Model for a Detailed Description of Biliary Transport

Chronic Liver Disease Progression (LiSyM-DP - Pillar II)

(Show All)

Poster at SBMC 2018

Creators: Lars Ole Schwen, Lars Kuepfer, Ahmed Ghallab, Jan Hengstler, Tobias Preusser, Raymond Reif

Contributor: Lars Ole Schwen

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Created: 29th Jun 2018 at 09:17, Last updated: 4th Jul 2018 at 09:00