Martin Golebiewski
Data management and standardization expert for systems biology and systems medicine, responsible for the data management user requirements and user contacts within the German LiSyM network (Liver Systems Medicine: http://lisym.org/) and associated to the FAIRDOM team.
Involved in different standardization initiatives and committees, i.e. COMBINE (http://co.mbine.org), ISO/TC 276 Biotechnology (https://www.iso.org/committee/4514241.html), European COST action CHARME (http://www.cost-charme.eu) and others.
SEEK ID: https://seek.lisym.org/people/3
Location:
Germany
Expertise: Data Management, Bioinformatics, Databases, Systems Biology, Biochemistry, Standards
Tools: kinetic modelling, Ontologies, Databases, Workflows, Mathematical Modelling
https://orcid.org/0000-0002-8683-7084 
Project roles
Project administrator
- LiSyM Core Infrastructure and Management (LiSyM-PD)
- Early Metabolic Injury (LiSyM-EMI - Pillar I)
- Chronic Liver Disease Progression (LiSyM-DP - Pillar II)
- Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III)
- Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV)
- Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP)
- Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM)
- The Hedgehog Signalling Pathway (LiSyM-JGMMS)
- Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF)
- LiSyM PALs
- Project Management PTJ
- LiSyM network
Asset housekeeper
- LiSyM PALs
- Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III)
- Chronic Liver Disease Progression (LiSyM-DP - Pillar II)
- Early Metabolic Injury (LiSyM-EMI - Pillar I)
- LiSyM Core Infrastructure and Management (LiSyM-PD)
- Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV)
- The Hedgehog Signalling Pathway (LiSyM-JGMMS)
Martin's tagsLiSyM Core Infrastructure and Management (LiSyM-PD) (HITS gGmbH) ; Early Metabolic Injury (LiSyM-EMI - Pillar I) (HITS gGmbH) ; Chronic Liver Disease Progression (LiSyM-DP - Pillar II) (HITS gGmbH) ; Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III) (HITS gGmbH) ; Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV) (HITS gGmbH) ; Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP) (HITS gGmbH) ; Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM) (HITS gGmbH) ; The Hedgehog Signalling Pathway (LiSyM-JGMMS) (HITS gGmbH) ; Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF) (HITS gGmbH) ; LiSyM PALs (HITS gGmbH) ; Project Management PTJ (HITS gGmbH) ; LiSyM network (HITS gGmbH)
Related items
This comprises the whole LiSyM network
Public web page: http://www.lisym.org
Public web page: Not specified
Non-alcoholic fatty liver disease (NAFLD) is the most common chronic liver disease worldwide. LiSyM-EMI looks into the transition from steatosis to non-alcoholic steatohepatitis (NASH) as the disease-defining moment in NAFLD. A systems analysis of these early disease events will be performed to elucidate the molecular mechanisms that trigger disease establishment.
Public web page: Not specified
Major infrastructure backbone of the whole LiSyM network. It comprises the core management tasks of the program directorate and the scientific project management, as well as the central data management. The data management concept relies on FAIRDOM (http://fair-dom.org) and uses the LiSyM SEEK platform as a major hub for exchanging data, models, SOPs and other information, as well as yellow pages for the projects with its corresponding members, institutions, events, presentations and publications.
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Public web page: Not specified
This is a generic project that comprises all LiSyM data management PALs and associated FAIRDOM PALs, as well as the LiSyM data management team.
Public web page: Not specified
Snapshots: No snapshots
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Download
The purpose of this document is to define procedures to follow for exchanging the following items between collaboration partners within the LiSyM network:
a) Exchanging samples of human origin obtained from a natural person (i.e. a patient or other human subject).
b) Exchanging material derived from samples of human origin as defined in a).
c) Exchanging associated data describing samples of human origin and derived material as defined in a) and b).
d) Exchanging data derived from samples of human
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Creators: Martin Golebiewski, Frank Lammert, Wolfgang Müller
Contributor: Martin Golebiewski
This SOP - Standard Operating Procedure for Sample Collection and Preservation of Blood and
Endometrial Tissue were developed at NIH University of California San Francisco Human Endometrial Tissue and DNA Bank
by Elizabeth Sheldonand, Ramsey A McIntire
Creators: Olga Krebs, Martin Golebiewski, Elizabeth Sheldonand, Ramsey A McIntire
Contributor: Olga Krebs
Abstract (Expand)
Author: Martin Golebiewski
Date Published: 2019
Journal: Encyclopedia of Bioinformatics and Computational Biology
Abstract (Expand)
Authors: M. L. Neal, Matthias König, D. Nickerson, G. Misirli, R. Kalbasi, A. Drager, K. Atalag, V. Chelliah, M. T. Cooling, D. L. Cook, S. Crook, M. de Alba, S. H. Friedman, A. Garny, J. H. Gennari, P. Gleeson, Martin Golebiewski, M. Hucka, N. Juty, C. Myers, B. G. Olivier, H. M. Sauro, M. Scharm, J. L. Snoep, V. Toure, A. Wipat, O. Wolkenhauer, D. Waltemath
Date Published: 22nd Jan 2018
Journal: Brief Bioinform
Abstract (Expand)
Authors: F. Schreiber, G. D. Bader, P. Gleeson, Martin Golebiewski, M. Hucka, S. M. Keating, N. L. Novere, C. Myers, D. Nickerson, B. Sommer, D. Waltemath
Date Published: 30th Mar 2018
Journal: J Integr Bioinform
Abstract:
Authors: D. Waltemath, F. T. Bergmann, C. Chaouiya, T. Czauderna, P. Gleeson, C. Goble, Martin Golebiewski, M. Hucka, N. Juty, O. Krebs, N. Le Novere, H. Mi, I. I. Moraru, C. J. Myers, D. Nickerson, B. G. Olivier, N. Rodriguez, F. Schreiber, L. Smith, F. Zhang, E. Bonnet
Date Published: No date defined
Journal: Stand Genomic Sci
Abstract (Expand)
Authors: Chris J. Myers, Gary Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nicolas Le Novere, David P. Nickerson, Falk Schreiber, Dagmar Waltemath
Date Published: 1st Dec 2017
Journal: 2017 Winter Simulation Conference (WSC)
Poster presentation at SBMC 2018 (Bremen)
Creators: Martin Golebiewski, Olga Krebs, Hadas Leonov, Wolfgang Müller, Stuart Owen, Maja Rey, Natalie Stanford, Andreas Weidemann, Ulrike Wittig, Katy Wolstencroft, Jacky L. Snoep, Carole Goble
Contributor: Martin Golebiewski
LiSyM/de.NBI/ERASysAPP Tutorial: How to Share FAIR — The FAIRDOM Data and Model Management Practice
Introduction into SABIO-RK
Creator: Maja Rey
Contributor: Martin Golebiewski
LiSyM/de.NBI/ERASysAPP Tutorial: How to Share FAIR — The FAIRDOM Data and Model Management Practice
Hands-on tasks
Creator: Maja Rey
Contributor: Martin Golebiewski
LiSyM/de.NBI/ERASysAPP Tutorial: How to Share FAIR — The FAIRDOM Data and Model Management Practice
Hands-on slides
Creator: Maja Rey
Contributor: Martin Golebiewski
LiSyM/de.NBI/ERASysAPP Tutorial: How to Share FAIR — The FAIRDOM Data and Model Management Practice
Introduction slides
Creator: Martin Golebiewski
Contributor: Martin Golebiewski
All LiSyM groups should present their work at this meeting either by oral presentation or poster.
Start Date: 9th May 2019
End Date: 10th May 2019
Event Website: https://goo.gl/forms/EelUYE3RGyikB8AV2
Country: DE
City: Leipzig
Mathematical models of cellular pathways are essential tools in systems biology and systems medicine. They contribute to an understanding of structure and dynamics of cellular processes far beyond their isolated parts, as well as the prevention, diagnosis and therapy of diseases. Yet, there are a variety of open questions.
The hackathon will gather experts in pathway modeling to develop tools for model development, reuse and merging. This hackathon will focus on:
Topic 1: Implementation of import
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Start Date: 18th Mar 2019
End Date: 20th Mar 2019
Event Website: https://www.integrative-pathway-models.de/meetings/hackathon-2019/index.html
Country: DE
City: Frankfurt am Main
(in German)
Im Mittelpunkt der Tagung steht die methodische und anwendungsorientierte Forschung in der Medizinischen Informatik, Biometrie, Epidemiologie, Medizinischen Bioinformatik und Systembiologie sowie der Medizinischen Dokumentation. Das Leitthema der GMDS-Jahrestagung 2019 lautet: „Wandel gestalten - Kreative Lösungen für innovative Medizin" und zielt darauf ab, im gemeinsamen Dialog zwischen Forschung und Praxis die Zukunft aktiv zu gestalten. In Zeiten der Digitalisierung, in der
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Start Date: 8th Sep 2019
End Date: 11th Sep 2019
Event Website: https://gmds.de/aktuelles-termine/tagungen-2019-willkommen/
Country: DE
City: Dortmund
Topic: Precision Medicine-where Bioinformatics & Medical Informatics meet.
The German Conference on Bioinformatics (GCB) is an annual, international conference devoted to all areas of bioinformatics and meant as a platform for the whole bioinformatics community. Recent meetings attracted a multinational audience with 250 – 300 participants each year.
In 2019, the conference focuses on bringing physicians, bioinformatics & medical informatics together and aims to showcase applications and
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Country: DE
City: Heidelberg
The ConISyM – Converging Imaging and Systems Medicine - summer school is intended to provide an in-depth training of early-stage researchers to gain a cross-disciplinary knowledge within the fields of multiparametric imaging, histopathology, liquid biopsy and imaging omics in systems medicine.
ConISyM wants to feature participants to being able to think beyond their own research field by combining multiple techniques to get the best value out of the respective application.
Improve your skills:
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Country: DE
City: Kreuth
