Martin Golebiewski
Data management and standardization expert for systems biology and systems medicine, responsible for the data management user requirements and user contacts within the German LiSyM network (Liver Systems Medicine: http://lisym.org/) and associated to the FAIRDOM team.
Involved in different standardization initiatives and committees, i.e. COMBINE (http://co.mbine.org), ISO/TC 276 Biotechnology (https://www.iso.org/committee/4514241.html), European COST action CHARME (http://www.cost-charme.eu) and others.
SEEK ID: https://seek.lisym.org/people/3
Location:
Germany
Expertise: Databases, Systems Biology, Biochemistry, Standards, Data Management, Bioinformatics
Tools: Databases, Workflows, Mathematical Modelling, kinetic modelling, Ontologies
https://orcid.org/0000-0002-8683-7084 
Project roles
Project administrator
- LiSyM Core Infrastructure and Management (LiSyM-PD)
- Early Metabolic Injury (LiSyM-EMI - Pillar I)
- Chronic Liver Disease Progression (LiSyM-DP - Pillar II)
- Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III)
- Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV)
- Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP)
- Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM)
- The Hedgehog Signalling Pathway (LiSyM-JGMMS)
- Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF)
- LiSyM PALs
- LiSyM network
- LiSyM-Krebs Partnering
Asset housekeeper
- LiSyM PALs
- Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III)
- Chronic Liver Disease Progression (LiSyM-DP - Pillar II)
- Early Metabolic Injury (LiSyM-EMI - Pillar I)
- LiSyM Core Infrastructure and Management (LiSyM-PD)
- Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV)
- The Hedgehog Signalling Pathway (LiSyM-JGMMS)
- LiSyM network
Martin's tagsLiSyM Core Infrastructure and Management (LiSyM-PD) (HITS gGmbH) ; Early Metabolic Injury (LiSyM-EMI - Pillar I) (HITS gGmbH) ; Chronic Liver Disease Progression (LiSyM-DP - Pillar II) (HITS gGmbH) ; Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III) (HITS gGmbH) ; Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV) (HITS gGmbH) ; Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP) (HITS gGmbH) ; Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM) (HITS gGmbH) ; The Hedgehog Signalling Pathway (LiSyM-JGMMS) (HITS gGmbH) ; Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF) (HITS gGmbH) ; LiSyM PALs (HITS gGmbH) ; LiSyM network (HITS gGmbH) ; LiSyM-Krebs Partnering (HITS gGmbH)
Related items
This comprises the whole LiSyM network
Public web page: http://www.lisym.org
The incidence of this life-threatening acute-on-chronic liver failure (ACLF) is increasing, and early detection and cure are urgent clinical needs. Pillar III applies a Systems Medicine approach to identify the critical mechanisms of acute-on-chronic liver failure (ACLF) and to foster liver regeneration and repair.
Public web page: Not specified
Chronic liver diseases (CLD) progression leads to cirrhosis, often cancer, and ultimately to organ failure and death. Because of the complexity of this scenario, a Systems Medicine approach is chosen to develop strategies to better characterize progression and resolution of fibrosis. Pillar II aims to define key molecular mechanisms and structural changes in tissue architecture during the progression of CLD by visualizing and quantifying at a cellular level, tissue and organ scale.
Public web page: Not specified
Non-alcoholic fatty liver disease (NAFLD) is the most common chronic liver disease worldwide. LiSyM-EMI looks into the transition from steatosis to non-alcoholic steatohepatitis (NASH) as the disease-defining moment in NAFLD. A systems analysis of these early disease events will be performed to elucidate the molecular mechanisms that trigger disease establishment.
Public web page: Not specified
This generic project is intended to be a forum for all LiSyM partner and external stakeholders interested in participating in the BMBF initiative LiSyM-Krebs.
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Download
The purpose of this document is to define procedures to follow for exchanging the following items between collaboration partners within the LiSyM network:
a) Exchanging samples of human origin obtained from a natural person (i.e. a patient or other human subject).
b) Exchanging material derived from samples of human origin as defined in a).
c) Exchanging associated data describing samples of human origin and derived material as defined in a) and b).
d) Exchanging data derived from samples of human
...
Creators: Martin Golebiewski, Frank Lammert, Wolfgang Müller
Contributor: Martin Golebiewski
This SOP - Standard Operating Procedure for Sample Collection and Preservation of Blood and
Endometrial Tissue were developed at NIH University of California San Francisco Human Endometrial Tissue and DNA Bank
by Elizabeth Sheldonand, Ramsey A McIntire
Creators: Olga Krebs, Martin Golebiewski, Elizabeth Sheldonand, Ramsey A McIntire
Contributor: Olga Krebs
Abstract (Expand)
Authors: N. J. Stanford, M. Scharm, P. D. Dobson, Martin Golebiewski, M. Hucka, V. B. Kothamachu, D. Nickerson, S. Owen, J. Pahle, U. Wittig, D. Waltemath, C. Goble, P. Mendes, J. Snoep
Date Published: 12th Oct 2019
Journal: Methods Mol Biol
Abstract (Expand)
Authors: Falk Schreiber, Björn Sommer, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M. Keating, Matthias König, Chris Myers, David Nickerson, Dagmar Waltemath
Date Published: 26th Jun 2019
Journal: Not specified
Abstract (Expand)
Author: Martin Golebiewski
Date Published: 2019
Journal: Encyclopedia of Bioinformatics and Computational Biology
Abstract (Expand)
Authors: M. L. Neal, Matthias König, D. Nickerson, G. Misirli, R. Kalbasi, A. Drager, K. Atalag, V. Chelliah, M. T. Cooling, D. L. Cook, S. Crook, M. de Alba, S. H. Friedman, A. Garny, J. H. Gennari, P. Gleeson, Martin Golebiewski, M. Hucka, N. Juty, C. Myers, B. G. Olivier, H. M. Sauro, M. Scharm, J. L. Snoep, V. Toure, A. Wipat, O. Wolkenhauer, D. Waltemath
Date Published: 22nd Jan 2018
Journal: Brief Bioinform
Abstract (Expand)
Authors: F. Schreiber, G. D. Bader, P. Gleeson, Martin Golebiewski, M. Hucka, S. M. Keating, N. L. Novere, C. Myers, D. Nickerson, B. Sommer, D. Waltemath
Date Published: 30th Mar 2018
Journal: J Integr Bioinform
Poster presentation at SBMC 2018 (Bremen)
Creators: Martin Golebiewski, Olga Krebs, Hadas Leonov, Wolfgang Müller, Stuart Owen, Maja Rey, Natalie Stanford, Andreas Weidemann, Ulrike Wittig, Katy Wolstencroft, Jacky L. Snoep, Carole Goble
Contributor: Martin Golebiewski
LiSyM/de.NBI/ERASysAPP Tutorial: How to Share FAIR — The FAIRDOM Data and Model Management Practice
Introduction into SABIO-RK
Creator: Maja Rey
Contributor: Martin Golebiewski
LiSyM/de.NBI/ERASysAPP Tutorial: How to Share FAIR — The FAIRDOM Data and Model Management Practice
Hands-on tasks
Creator: Maja Rey
Contributor: Martin Golebiewski
LiSyM/de.NBI/ERASysAPP Tutorial: How to Share FAIR — The FAIRDOM Data and Model Management Practice
Hands-on slides
Creator: Maja Rey
Contributor: Martin Golebiewski
LiSyM/de.NBI/ERASysAPP Tutorial: How to Share FAIR — The FAIRDOM Data and Model Management Practice
Introduction slides
Creator: Martin Golebiewski
Contributor: Martin Golebiewski
The Computational Modeling in Biology Network (COMBINE) is an initiative to coordinate the development of the various community standards and formats in systems biology, synthetic biology and related fields. HARMONY is a codefest-type meeting, with a focus on development of the standards, interoperability and infrastructure. There are generally not many general discussions or oral presentations during HARMONY; instead, the time is devoted to allowing hands-on hacking and interaction between people
...
Start Date: 9th Mar 2020
End Date: 13th Mar 2020
Event Website: http://co.mbine.org/events/HARMONY_2020
Country: 
GB
City: Hinxton, Cambridge
Registration: https://docs.google.com/document/d/1ZokiSDgj-ekNpzqHnnEl4OMqX57w6LtuB56EEnCMpng/edit
60 Poster boards will be prepared for your poster presentation. Please register your poster in the following link:
https://docs.google.com/document/d/1ej2Mf_5Hkz28xDYEQiYA9cqWAztfmxO2KQn7AB1C-Y8/edit
Start Date: 4th Mar 2020
End Date: 5th Mar 2020
Event Website: Not specified
Country: DE
City: Berlin
e:Med brings together leading scientists and exceptional young researchers from all over Germany in the emerging field of Systems Medicine. Systems medicine uses interdisciplinary systems-oriented research on diseases to create a basis for understanding complex physiological and pathological processes for development of innovative personalized diagnosis, therapies, and preventive measures. Key to the appropriate analysis and possibly to the modelling of Big Data derived from information levels
...
Start Date: 8th Mar 2020
End Date: 10th Mar 2020
Event Website: http://www.sys-med.de/de/meeting/emed-kick-off-2020/
Country: DE
City: Bonn
ICSB is one of the largest international conferences on systems biology. Since the first conference in Tokyo in 2000, which was organized by Dr. Hiroaki Kitano, it has been held annually in different countries.
Country: 
US
City: Hartford, Connecticut
The "Computational Modeling in Biology" Network (COMBINE) is an initiative to coordinate the development of the various community standards and formats in systems biology, systems medicine, synthetic biology and related fields. COMBINE 2020 will be a workshop-style event with invited lectures, oral presentations and posters, but also reserving enough time for afternoon breakout sessions to discuss topics around data and model standardization and integration, as well as harmonization and further
...
Country: US
City: Farmington, Connecticut
